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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53501798_53501918_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53501798 - 53501918
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CGTGGCTGACCT
Flanking Amino Acid:
VKGKISGDAEGFSINLGSSS
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
41.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
68.5
0.42
0.9
61
35.3
Minor 5ss
32.6
-2
3.1
33.4
41.6
Minor BPS
43.4
-0.4
2.2
60.99
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015937
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027893
53501318 - 53503046
1729
ENSAPLT00000016628
53500684 - 53503046
2363