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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53502079_53502847_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53502079 - 53502847
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AGTTGCTGACCT
Flanking Amino Acid:
FCFSRDSTVKILIEFLRDKF
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
48.8
-0
2.1
72.16
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015937
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016628
53500684 - 53503046
2363