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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53513746_53520694_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53513746 - 53520694
Intron Length:
6949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGGCAC
U12 Branch Point Sequence:
TTTTCCTTTCCC
Flanking Amino Acid:
KPWGLPKPRRRLRGAEAGCV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
39.1
-0.6
1.3
38.2
41.7
Major PPT
73.9
0.54
0.9
70
30.9
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
49.2
-0
3.6
82.88
37.2

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486