Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53525791_53525882_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53525791 - 53525882

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTCTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGGAG

U12 Branch Point Sequence:

AAGGGGATGACG

Flanking Amino Acid:

RCRGNRSLGKMCSSSYSLCS

Intron Amino Acid Position:

534

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

-0

1.8

57.1

49.4

Major PPT

77.6

0.62

0.8

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

33.2

-1.4

2.4

33.96

40.4

Associated Gene:

Gene:

CARD10

Ensembl Gene ID:

ENSAPLG00000016022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016733

53513636 - 53532121

18486