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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53526471_53526653_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53526471 - 53526653
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTGCT
5'SS Class:
major
3'SS Sequence:
GTCTCCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCTCTCATCT
Flanking Amino Acid:
QREERCMPYKSLSCGSFSSM
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.9
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.5
0.66
0.8
73.3
31.7
Minor 5ss
35.4
-1.7
3.2
50.4
46
Minor BPS
51.9
0.14
1.8
73.23
43.6

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486