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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53527199_53527464_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53527199 - 53527464
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TCAAGCTTCACT
Flanking Amino Acid:
TLPSRQEVTRRSLVVQLSSM
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.9
35.3
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
78.3
0.64
0.9
72.8
37.4
Minor 5ss
35.4
-1.7
3.2
50.4
46
Minor BPS
48.7
-0
2.2
69.23
47.2

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486