Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53527646_53528438_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53527646 - 53528438

Intron Length:

793

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TGCTCCTCACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

TGCTCCTCACCA

Flanking Amino Acid:

GLKEGCRLIELRVPSLKEEV

Intron Amino Acid Position:

728

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

70.4

0.46

0.9

38.3

Minor 5ss

-2.2

3.2

46.1

Minor BPS

56.4

0.2

1.9

68.35

43.9

Associated Gene:

Gene:

CARD10

Ensembl Gene ID:

ENSAPLG00000016022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016733

53513636 - 53532121

18486