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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53528563_53528892_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53528563 - 53528892
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GTGCCCCCACCC
Flanking Amino Acid:
SSLVFQLDLQGYQPLREALE
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.4
41.8
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
85.1
0.79
0.7
77.2
31.5
Minor 5ss
26.1
-2.7
3
26
36.4
Minor BPS
42.9
-0.5
2
53.98
43.2

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486