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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53529134_53529445_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53529134 - 53529445
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAG
U12 Branch Point Sequence:
AGTTGCTTGAGG
Flanking Amino Acid:
LDKGTVPNYSRAHQLLKIQE
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
46.3
-0.2
1.7
60.4
45.8
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
48.5
-0.2
2.2
57.44
44.2

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486