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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53531289_53531587_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53531289 - 53531587
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGAAT
5'SS Class:
major
3'SS Sequence:
AATTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATCTATTCAATT
Flanking Amino Acid:
IRMIREAMEKNKHCLLELGV
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
67.7
38.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.1
0.72
0.8
78.5
35
Minor 5ss
27.5
-2.6
3.3
39.4
46.1
Minor BPS
54
0.2
1.7
71.33
40.1

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486