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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53531704_53531913_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53531704 - 53531913
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAA
U12 Branch Point Sequence:
GTGAAGGTGACG
Flanking Amino Acid:
EVTEKNVRGLRNLLGKPGQR
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
54.3
0.11
1.4
49.1
46.3
Major PPT
82.3
0.73
0.9
73.4
41.9
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
35
-1.3
2.5
40.74
43.5

Associated Gene:

Gene:
CARD10
Ensembl Gene ID:
ENSAPLG00000016022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016733
53513636 - 53532121
18486