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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53541886_53541979_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53541886 - 53541979
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
TGTGTCTTCGCT
Flanking Amino Acid:
EFDAFLASGRSWFCHLDDDN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
75.9
0.58
0.8
66
35.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
41.1
-0.6
3.6
71.89
45.2

Associated Gene:

Gene:
MFNG
Ensembl Gene ID:
ENSAPLG00000020867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024760
53541566 - 53544803
3238