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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53542134_53542687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53542134 - 53542687
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTGCCATTGATT
Flanking Amino Acid:
ASETLTNNQTKSVHFWFATG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.9
34.1
Major BPS
76.2
0.65
1
67
39.8
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
59.5
0.32
2.3
76.1
39.5
Minor BPS
54.1
0.21
1.7
69.5
41.8

Associated Gene:

Gene:
MFNG
Ensembl Gene ID:
ENSAPLG00000020867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024760
53541566 - 53544803
3238