About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53542774_53544100_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53542774 - 53544100
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTCTCCTAACC
Flanking Amino Acid:
KLASKMVPWASGRNFLKTSE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
68.8
43.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
81.7
0.71
0.8
73
37.3
Minor 5ss
34.1
-1.8
3.2
47.7
47.8
Minor BPS
60.9
0.32
1.7
72.3
38.7

Associated Gene:

Gene:
MFNG
Ensembl Gene ID:
ENSAPLG00000020867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024760
53541566 - 53544803
3238