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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5354416_5363156_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5354416 - 5363156
Intron Length:
8741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCT
Flanking Amino Acid:
MKPADSEKSNAVEDRKLFIG
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
78.1
36.1
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
68.7
0.67
1.5
84.06
36.9

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031223
5188947 - 5428458
239512
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000028650
5175313 - 5426764
251452
ENSAPLT00000010552
5188947 - 5426764
237818
ENSAPLT00000034517
5061983 - 5428458
366476