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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5363292_5371925_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5363292 - 5371925
Intron Length:
8634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GCCTCTTTAATT
Flanking Amino Acid:
ILRGPDGLSRVHSSNMEASR
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
71.6
0.76
1.2
75.88
41.7

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010552
5188947 - 5426764
237818