Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53654132_53654569_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53654132 - 53654569

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTCTC

5'SS Class:

major

3'SS Sequence:

CCCTTTCTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

TCTTCTGCAATT

Flanking Amino Acid:

VRKVDDPKKPNCFELFNPNC

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

70.3

40.5

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

74.8

0.56

0.9

71.2

33.3

Minor 5ss

-1

59.3

Minor BPS

51.1

0.11

2.2

75.4

42.3

Associated Gene:

Gene:

CYTH4

Ensembl Gene ID:

ENSAPLG00000016113

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033043

53652775 - 53670004

17230

ENSAPLT00000016843

53653586 - 53664764

11179