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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53662378_53663924_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53662378 - 53663924
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGGGT
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTCACCTTCACT
Flanking Amino Acid:
ENECSISLNKKLKEQIAQVF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
63.9
40.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
32
-2.1
3.8
46
43.9
Minor BPS
62.7
0.48
1.9
77.46
44.6

Associated Gene:

Gene:
CYTH4
Ensembl Gene ID:
ENSAPLG00000016113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016843
53653586 - 53664764
11179