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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53664765_53669808_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53664765 - 53669808
Intron Length:
5044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTATTTTCACA
Flanking Amino Acid:
GLFRMDFSPAGSSDLNEAEE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.6
0.84
0.7
85.1
29.7
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
49.8
-0
1.7
61.32
39.3

Associated Gene:

Gene:
CYTH4
Ensembl Gene ID:
ENSAPLG00000016113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033043
53652775 - 53670004
17230