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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53684063_53685518_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53684063 - 53685518
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTCAC
5'SS Class:
major
3'SS Sequence:
TGTATGCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTCATCCTAACT
Flanking Amino Acid:
RLRPLSYPQTDVFLICFSLV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.7
41.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
73.8
0.54
1
65.6
41
Minor 5ss
28.2
-2.5
3.1
35.3
41.4
Minor BPS
56
0.27
1.8
72.74
44.1

Associated Gene:

Gene:
RAC2
Ensembl Gene ID:
ENSAPLG00000016204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016917
53679304 - 53687518
8215