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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53710170_53711282_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53710170 - 53711282
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
GGTATCACACAG
Flanking Amino Acid:
RPYINITILKGEKGDRGEPG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
81.7
0.71
0.7
77.1
24.9
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
35.3
-1.2
1.8
36.27
38.3

Associated Gene:

Gene:
C1QTNF6
Ensembl Gene ID:
ENSAPLG00000016241
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038149
53709932 - 53715007
5076
ENSAPLT00000035793
53709932 - 53725113
15182
ENSAPLT00000016940
53708113 - 53724113
16001