About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53726742_53727978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53726742 - 53727978
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TTTTCTCTCTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
39.8
-0.7
3.6
75.99
41.5

Associated Gene:

Gene:
IL2RB
Ensembl Gene ID:
ENSAPLG00000016243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016950
53726658 - 53739469
12812