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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53727184_53727978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53727184 - 53727978
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TTTTCTCTCTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68
43.2
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
31.8
-2.1
3.8
46
49.3
Minor BPS
39.8
-0.7
3.6
75.99
41.5

Associated Gene:

Gene:
IL2RB
Ensembl Gene ID:
ENSAPLG00000016243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026982
53727070 - 53739469
12400