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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53743996_53745448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53743996 - 53745448
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAGA
5'SS Class:
major
3'SS Sequence:
GCTGTGTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAC
U12 Branch Point Sequence:
CCAGCCTGACCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.3
40.5
Major BPS
49.4
-0
1.1
56.7
36.5
Major PPT
63.9
0.31
1
55
44.7
Minor 5ss
34
-1.8
2.7
33.7
41.6
Minor BPS
44.6
-0.5
1.9
44.42
47.3

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148