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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53745615_53745797_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53745615 - 53745797
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
TAATCCATTAGT
Flanking Amino Acid:
GTAATTWYFLDYRPWHLEPS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
75.6
0.58
1
72.2
37.8
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
48.4
-0
2.2
71.14
45.1

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148