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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53745941_53746124_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53745941 - 53746124
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
ACTCTCGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
CGATAGTTACCA
Flanking Amino Acid:
WLESAKLQNMLKDLIRATEL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
64.5
35
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
76
0.58
0.9
69.2
36.3
Minor 5ss
24.2
-3
3.2
26.5
38
Minor BPS
42.9
-0.5
2.3
53.7
44.4

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148