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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53746193_53747297_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53746193 - 53747297
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGATATTTAATG
Flanking Amino Acid:
YYNSSTVYAFGEGALTFFFW
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.3
0.5
1
66.9
39.9
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
54.3
-0
1.6
54.89
40.2

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148
ENSAPLT00000040498
53743866 - 53759885
16020