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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53750296_53751260_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53750296 - 53751260
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCCAT
5'SS Class:
major
3'SS Sequence:
CCCCGGCGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGAGGTTTAAAT
Flanking Amino Acid:
KDIVVLKSTLGCYRYSYVQE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
59.7
46.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
61.3
0.25
1
56.5
38.8
Minor 5ss
37.7
-1.4
3.4
47.2
48.2
Minor BPS
48.8
-0
1.9
66.54
44

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000000721
53743601 - 53759748
16148