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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53751990_53752301_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53751990 - 53752301
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTATTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGGCTTTTAATG
Flanking Amino Acid:
ILTAQVVPLKACEVNITLRE
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.2
0.66
0.9
72.1
37
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
51.9
-0
1.3
49.55
38.8

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148
ENSAPLT00000040498
53743866 - 53759885
16020