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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53752415_53752900_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53752415 - 53752900

Intron Length:

486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGGAT

U12 Branch Point Sequence:

CTGCTCTGGACC

Flanking Amino Acid:

PNTQCTWHMMVPSLGYGVTL

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.7

34.5

Major BPS

56.3

0.16

1.5

57.1

49.4

Major PPT

78.6

0.64

0.7

72.5

25.7

Minor 5ss

31.8

-2.1

3.3

40.1

39.9

Minor BPS

50.4

-0

1.5

59.23

40.2

Associated Gene:

Gene:

TMPRSS6

Ensembl Gene ID:

ENSAPLG00000000590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027180

53743601 - 53759748

16148

ENSAPLT00000000721

53743601 - 53759748

16148

ENSAPLT00000040498

53743866 - 53759885

16020