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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53753011_53754273_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53753011 - 53754273
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTGCCCAGGACA
Flanking Amino Acid:
TQGQWIIQNRRLCGLRTLQA
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
76.9
0.61
0.9
73.7
36.9
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
46.8
-0.2
1.8
57.82
41.4

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148