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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53755362_53756046_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53755362 - 53756046
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCACACCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CCCCCCACACCT
Flanking Amino Acid:
CPNGLDERNCVCPAKFQCRE
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
69.5
0.44
0.9
61.5
34.3
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
41.4
-0.5
2
54.18
47

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148
ENSAPLT00000040498
53743866 - 53759885
16020