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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53756568_53757316_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53756568 - 53757316
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TCCTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACTGAAGCACCT
Flanking Amino Acid:
CRDLSDEERCDCGLQAPLSR
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.6
0.64
0.7
76.5
25.5
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
31.6
-1.3
2.3
48.34
44.3

Associated Gene:

Gene:
TMPRSS6
Ensembl Gene ID:
ENSAPLG00000000590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040498
53743866 - 53759885
16020
ENSAPLT00000027180
53743601 - 53759748
16148
ENSAPLT00000000721
53743601 - 53759748
16148