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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53765702_53767470_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53765702 - 53767470
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GATTTCTTAATC
Flanking Amino Acid:
LVLDKDMAEEGVLEEAEFYN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.8
0.54
0.8
72.3
32.3
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
76.1
0.8
1.1
76.03
33.8

Associated Gene:

Gene:
KCTD17
Ensembl Gene ID:
ENSAPLG00000030290
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001625
53761144 - 53768739
7596