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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53767580_53768526_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53767580 - 53768526
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TCTCTGTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTCACC
Flanking Amino Acid:
CQGEELQSDRDETGAYLIDR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.5
0.46
1
65.1
41.2
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
64.4
0.44
1.7
75.75
34.8

Associated Gene:

Gene:
KCTD17
Ensembl Gene ID:
ENSAPLG00000030290
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001625
53761144 - 53768739
7596