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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53787343_53787943_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53787343 - 53787943
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTGTCTTTAAG
Flanking Amino Acid:
SDPVLASNTAVKPEEEKKEH
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
71.6
0.54
1
72
33.1
Major PPT
79.4
0.66
1
83.6
31.9
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
51.3
-0.1
1.9
63.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030389
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038877
53785732 - 53805078
19347