About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5378953_5380356_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5378953 - 5380356
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TGTTAATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTGTTGTTAATT
Flanking Amino Acid:
LGGLTPQYLALLQQATSSSN
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.7
0.69
0.9
74
40.3
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
58.3
0.34
2.1
75.75
41.6

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000028650
5175313 - 5426764
251452
ENSAPLT00000010552
5188947 - 5426764
237818
ENSAPLT00000034517
5061983 - 5428458
366476
ENSAPLT00000031223
5188947 - 5428458
239512