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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53790348_53790559_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53790348 - 53790559
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTCTATGAACT
Flanking Amino Acid:
NWHGRRTDELGKWHQKNALN
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
70
0.5
1
67
39.8
Major PPT
79.6
0.67
0.9
72.7
36.6
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
61.6
0.44
1.7
83.73
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030389
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038877
53785732 - 53805078
19347