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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53790635_53802563_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53790635 - 53802563
Intron Length:
11929

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ACTTCTTTAAGG
Flanking Amino Acid:
ALEEKYGKKKDCSPLLDHFS
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.9
81.8
38.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
77
0.61
0.8
72.3
31.3
Minor 5ss
39.5
-1.2
4.2
64.1
47.4
Minor BPS
63.7
0.29
1.7
65.07
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030389
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038877
53785732 - 53805078
19347