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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53796098_53797598_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53796098 - 53797598
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCACCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCACAACA
Flanking Amino Acid:
EEINCLQMLDGMIKNSSPEL
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.5
0.35
1
59.6
35.4
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
53.5
0.11
1.9
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038858
53795641 - 53806443
10803
ENSAPLT00000002084
53795641 - 53809558
13918