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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53801695_53803920_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53801695 - 53803920
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
GATATCAAAACT
Flanking Amino Acid:
EEKLIEAHKNIKVLPPTNLT
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
54.2
40.1
Major BPS
70.2
0.5
1
72.1
33
Major PPT
84.8
0.78
0.8
76.9
37.3
Minor 5ss
40.9
-1
3
55.5
43.2
Minor BPS
47.7
-0.1
1.9
67.58
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017324
53799973 - 53809469
9497
ENSAPLT00000002084
53795641 - 53809558
13918
ENSAPLT00000040687
53799973 - 53808679
8707
ENSAPLT00000038858
53795641 - 53806443
10803