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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53802676_53803627_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53802676 - 53803627
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTACTCTAACA
Flanking Amino Acid:
KDILHGFQVSRLQ*
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.4
0.5
1
66.8
38.7
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
63.2
0.41
1.7
75.51
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030389
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038877
53785732 - 53805078
19347