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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53804082_53804182_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53804082 - 53804182
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCCCACTGATCT
Flanking Amino Acid:
GLFFRATPASAEEECSPVYE
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
64.9
41.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81.7
0.71
0.7
74
31.1
Minor 5ss
41.4
-1
3.2
52.6
44.9
Minor BPS
46.3
-0.2
1.9
63.34
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040687
53799973 - 53808679
8707
ENSAPLT00000038858
53795641 - 53806443
10803
ENSAPLT00000017324
53799973 - 53809469
9497
ENSAPLT00000002084
53795641 - 53809558
13918