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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53805521_53807913_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53805521 - 53807913
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTATCATTCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AAATTGTTAAAT
Flanking Amino Acid:
MTLNFNHSHGKSASCFLPLF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
52.9
0.07
1.7
61
39
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
50.3
0.09
2.1
69.59
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002077
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040687
53799973 - 53808679
8707
ENSAPLT00000017324
53799973 - 53809469
9497