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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53821120_53821411_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53821120 - 53821411
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AAACTTTTAACT
Flanking Amino Acid:
DQPSFLQVVDRQMKTSAESP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.1
27.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.4
0.59
0.8
73.7
30.2
Minor 5ss
25.9
-2.8
3
30.8
43.1
Minor BPS
66
0.58
1.2
73.76
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043101
53819880 - 53825730
5851