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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53821513_53822491_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53821513 - 53822491
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATGT
Flanking Amino Acid:
KSLLIQSYLEKVNLGNWVAN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
92.1
0.95
0.6
91.2
20.4
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
58.8
0.36
2.1
84.24
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043101
53819880 - 53825730
5851