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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53823847_53824896_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53823847 - 53824896
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTTCTC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCTAT
U12 Branch Point Sequence:
GGTTCCCTATTT
Flanking Amino Acid:
SEEFSWETANVMSPVLLPVM
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
61.9
42.7
Major BPS
56.2
0.15
1.3
54.7
42.5
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
37.9
-1.4
3.2
50.3
41.3
Minor BPS
54.1
0.21
2
74.56
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043101
53819880 - 53825730
5851