About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53825069_53825171_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53825069 - 53825171
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
ACCTCTGTCATT
Flanking Amino Acid:
QYWKHNQYNETLQTLNISND
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
44.3
-0.3
2.3
60.82
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043101
53819880 - 53825730
5851