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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53869540_53871423_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53869540 - 53871423
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTAAGCA
Flanking Amino Acid:
DIKKAVGAFSAAESFNYKKF
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
0.8
70.3
30.4
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
62.3
0.38
1.9
78.69
38.2

Associated Gene:

Gene:
PVALB
Ensembl Gene ID:
ENSAPLG00000002414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002425
53869407 - 53877373
7967