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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53871557_53872016_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53871557 - 53872016
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
RSGFIEEEELKFVLKGFTPD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.5
0.51
0.8
69.5
31.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
PVALB
Ensembl Gene ID:
ENSAPLG00000002414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002425
53869407 - 53877373
7967